DNA-directed RNA polymerase II subunit RPB3
Intramolecular
Cysteine 135 and cysteine 139
Cysteine 133 and cysteine 139
Cysteine 139 and cysteine 142
Cysteine 133 and cysteine 142
Cysteine 133 and cysteine 135
Cysteine 135 and cysteine 142
7ozp C 90 C 94
A redox-regulated disulphide may form within DNA-directed RNA polymerase II subunit RPB3 between cysteines 135 and 139 (90 and 94 respectively in this structure).
Details
Redox score ?
88
PDB code
7ozp
Structure name
rna polymerase ii dimer (class 3)
Structure deposition date
2021-06-28
Thiol separation (Å)
4
Half-sphere exposure sum ?
35
Minimum pKa ?
7
% buried
0
Peptide accession
A0A481DF93
Residue number A
135
Residue number B
139
Peptide name
DNA-directed RNA polymerase II subunit RPB3
Ligandability
Cysteine 135 of DNA-directed RNA polymerase II subunit RPB3
Cysteine 139 of DNA-directed RNA polymerase II subunit RPB3
7ega q 88 q 94
A redox-regulated disulphide may form within DNA-directed RNA polymerase II subunit RPB3 between cysteines 133 and 139 (88 and 94 respectively in this structure).
Details
Redox score ?
86
PDB code
7ega
Structure name
tfiid-based intermediate pic on puma promoter
Structure deposition date
2021-03-24
Thiol separation (Å)
4
Half-sphere exposure sum ?
39
Minimum pKa ?
6
% buried
0
Peptide accession
A0A481DF93
Residue number A
133
Residue number B
139
Peptide name
DNA-directed RNA polymerase II subunit RPB3
Ligandability
Cysteine 133 of DNA-directed RNA polymerase II subunit RPB3
Cysteine 139 of DNA-directed RNA polymerase II subunit RPB3
7ozn O 94 O 97
A redox-regulated disulphide may form within DNA-directed RNA polymerase II subunit RPB3 between cysteines 139 and 142 (94 and 97 respectively in this structure).
Details
Redox score ?
84
PDB code
7ozn
Structure name
rna polymerase ii dimer (class 1)
Structure deposition date
2021-06-28
Thiol separation (Å)
3
Half-sphere exposure sum ?
49
Minimum pKa ?
7
% buried
6
Peptide accession
A0A481DF93
Residue number A
139
Residue number B
142
Peptide name
DNA-directed RNA polymerase II subunit RPB3
Ligandability
Cysteine 139 of DNA-directed RNA polymerase II subunit RPB3
Cysteine 142 of DNA-directed RNA polymerase II subunit RPB3
7ozp C 88 C 97
A redox-regulated disulphide may form within DNA-directed RNA polymerase II subunit RPB3 between cysteines 133 and 142 (88 and 97 respectively in this structure).
Details
Redox score ?
82
PDB code
7ozp
Structure name
rna polymerase ii dimer (class 3)
Structure deposition date
2021-06-28
Thiol separation (Å)
4
Half-sphere exposure sum ?
46
Minimum pKa ?
8
% buried
6
Peptide accession
A0A481DF93
Residue number A
133
Residue number B
142
Peptide name
DNA-directed RNA polymerase II subunit RPB3
Ligandability
Cysteine 133 of DNA-directed RNA polymerase II subunit RPB3
Cysteine 142 of DNA-directed RNA polymerase II subunit RPB3
7ozn C 88 C 90
A redox-regulated disulphide may form within DNA-directed RNA polymerase II subunit RPB3 between cysteines 133 and 135 (88 and 90 respectively in this structure).
Details
Redox score ?
81
PDB code
7ozn
Structure name
rna polymerase ii dimer (class 1)
Structure deposition date
2021-06-28
Thiol separation (Å)
4
Half-sphere exposure sum ?
33
Minimum pKa ?
11
% buried
0
Peptide accession
A0A481DF93
Residue number A
133
Residue number B
135
Peptide name
DNA-directed RNA polymerase II subunit RPB3
Ligandability
Cysteine 133 of DNA-directed RNA polymerase II subunit RPB3
Cysteine 135 of DNA-directed RNA polymerase II subunit RPB3
7ozp O 90 O 97
A redox-regulated disulphide may form within DNA-directed RNA polymerase II subunit RPB3 between cysteines 135 and 142 (90 and 97 respectively in this structure).
Details
Redox score ?
80
PDB code
7ozp
Structure name
rna polymerase ii dimer (class 3)
Structure deposition date
2021-06-28
Thiol separation (Å)
4
Half-sphere exposure sum ?
43
Minimum pKa ?
8
% buried
6
Peptide accession
A0A481DF93
Residue number A
135
Residue number B
142
Peptide name
DNA-directed RNA polymerase II subunit RPB3
Ligandability
Cysteine 135 of DNA-directed RNA polymerase II subunit RPB3
Cysteine 142 of DNA-directed RNA polymerase II subunit RPB3
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