Human nkt tcr beta chain
Intermolecular
Cysteine 166 of TRA@ protein and cysteine 176
Cysteine 176 and cysteine 43 of TRA@ protein
Cysteine 157 of T cell receptor alpha chain constant and cysteine 176
Cysteine 176 and cysteine 167 of TRA@ protein
Cysteine 164 of Human nkt tcr alpha chain and cysteine 176
Cysteine 161 of T-cell receptor, sp3.4 alpha chain and cysteine 176
Cysteine 80 of Human nkt tcr alpha chain and cysteine 176
Intramolecular
Cysteine 24 and cysteine 94
Cysteine 26 and cysteine 94
Cysteine 150 and cysteine 215
Cysteine 150 and cysteine 94
6u07 A 166 B 173
A redox-regulated disulphide may form between cysteine 166 of TRA@ protein and cysteine 176 of Human nkt tcr beta chain (166 and 173 respectively in this structure).
Details
Redox score ?
80
PDB code
6u07
Structure name
computational stabilization of t cell receptor constant domains
Structure deposition date
2019-08-13
Thiol separation (Å)
2
Half-sphere exposure sum ?
70
Minimum pKa ?
nan
% buried
nan
Peptide A name
TRA@ protein
Peptide B name
Human nkt tcr beta chain
Peptide A accession
Q2YD82
Peptide B accession
K7N5M4
Peptide A residue number
166
Peptide B residue number
176
Ligandability
Cysteine 166 of TRA@ protein
Cysteine 176 of Human nkt tcr beta chain
Cysteine 166 in protein A could not be asigned to a Uniprot residue.
4mnh C 173 D 167
A redox-regulated disulphide may form between cysteine 176 of Human nkt tcr beta chain and cysteine 43 of TRA@ protein (173 and 167 respectively in this structure).
Details
Redox score ?
80
PDB code
4mnh
Structure name
structure of the dp10
Structure deposition date
2013-09-10
Thiol separation (Å)
2
Half-sphere exposure sum ?
69
Minimum pKa ?
nan
% buried
nan
Peptide A name
Human nkt tcr beta chain
Peptide B name
TRA@ protein
Peptide A accession
K7N5M4
Peptide B accession
Q6PJ56
Peptide A residue number
176
Peptide B residue number
43
Ligandability
Cysteine 176 of Human nkt tcr beta chain
Cysteine 43 of TRA@ protein
6dkp D 157 E 172
A redox-regulated disulphide may form between cysteine 157 of T cell receptor alpha chain constant and cysteine 176 of Human nkt tcr beta chain (157 and 172 respectively in this structure).
Details
Redox score ?
80
PDB code
6dkp
Structure name
the complex among dmf5(alpha-d26y, alpha-y50a,beta-l98w) tcr, human class i mhc hla-a2 and mart-1(26-35)(a27l) peptide
Structure deposition date
2018-05-30
Thiol separation (Å)
2
Half-sphere exposure sum ?
71
Minimum pKa ?
nan
% buried
nan
Peptide A name
T cell receptor alpha chain constant
Peptide B name
Human nkt tcr beta chain
Peptide A accession
P01848
Peptide B accession
K7N5M4
Peptide A residue number
157
Peptide B residue number
176
Ligandability
Cysteine 157 of T cell receptor alpha chain constant
Cysteine 176 of Human nkt tcr beta chain
Cysteine 157 in protein A could not be asigned to a Uniprot residue.
4mnh A 173 B 167
A redox-regulated disulphide may form between cysteine 176 of Human nkt tcr beta chain and cysteine 167 of TRA@ protein (173 and 167 respectively in this structure).
Details
Redox score ?
79
PDB code
4mnh
Structure name
structure of the dp10
Structure deposition date
2013-09-10
Thiol separation (Å)
2
Half-sphere exposure sum ?
75
Minimum pKa ?
nan
% buried
nan
Peptide A name
Human nkt tcr beta chain
Peptide B name
TRA@ protein
Peptide A accession
K7N5M4
Peptide B accession
Q6PJ56
Peptide A residue number
176
Peptide B residue number
167
Ligandability
Cysteine 176 of Human nkt tcr beta chain
Cysteine 167 of TRA@ protein
Cysteine 167 in protein B could not be asigned to a Uniprot residue.
6d78 D 157 E 172
A redox-regulated disulphide may form between cysteine 164 of Human nkt tcr alpha chain and cysteine 176 of Human nkt tcr beta chain (157 and 172 respectively in this structure).
Details
Redox score ?
79
PDB code
6d78
Structure name
the complex between high-affinity tcr dmf5(alpha-d26y,beta-l98w) and human class i mhc hla-a2 with the bound mart-1(27-35)peptide
Structure deposition date
2018-04-24
Thiol separation (Å)
2
Half-sphere exposure sum ?
71
Minimum pKa ?
nan
% buried
nan
Peptide A name
Human nkt tcr alpha chain
Peptide B name
Human nkt tcr beta chain
Peptide A accession
K7N5M3
Peptide B accession
K7N5M4
Peptide A residue number
164
Peptide B residue number
176
Ligandability
Cysteine 164 of Human nkt tcr alpha chain
Cysteine 176 of Human nkt tcr beta chain
7n4k D 174 E 180
A redox-regulated disulphide may form between cysteine 161 of T-cell receptor, sp3.4 alpha chain and cysteine 176 of Human nkt tcr beta chain (174 and 180 respectively in this structure).
Details
Redox score ?
74
PDB code
7n4k
Structure name
6218 tcr in complex with h2-db pa 224
Structure deposition date
2021-06-04
Thiol separation (Å)
3
Half-sphere exposure sum ?
74
Minimum pKa ?
7
% buried
94
Peptide A name
T-cell receptor, sp3
Peptide B name
Human nkt tcr beta chain
Peptide A accession
K7N5N2
Peptide B accession
K7N5M4
Peptide A residue number
161
Peptide B residue number
176
Ligandability
Cysteine 161 of T-cell receptor, sp3.4 alpha chain
Cysteine 176 of Human nkt tcr beta chain
5wlg D 80 E 170
A redox-regulated disulphide may form between cysteine 80 of Human nkt tcr alpha chain and cysteine 176 of Human nkt tcr beta chain (80 and 170 respectively in this structure). However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?
Details
Redox score ?
33
PDB code
5wlg
Structure name
crystal structure of h-2db with the gap501 peptide (sql)
Structure deposition date
2017-07-26
Thiol separation (Å)
10
Half-sphere exposure sum ?
65
Minimum pKa ?
12
% buried
nan
Peptide A name
Human nkt tcr alpha chain
Peptide B name
Human nkt tcr beta chain
Peptide A accession
K7N5M3
Peptide B accession
K7N5M4
Peptide A residue number
80
Peptide B residue number
176
Ligandability
Cysteine 80 of Human nkt tcr alpha chain
Cysteine 176 of Human nkt tcr beta chain
Cysteine 80 in protein A could not be asigned to a Uniprot residue.
6r2l E 24 E 93
A redox-regulated disulphide may form within Human nkt tcr beta chain between cysteines 24 and 94 (24 and 93 respectively in this structure).
Details
Redox score ?
82
PDB code
6r2l
Structure name
nybr1-a2-slskildtv
Structure deposition date
2019-03-18
Thiol separation (Å)
2
Half-sphere exposure sum ?
82
Minimum pKa ?
nan
% buried
nan
Peptide accession
K7N5M4
Residue number A
24
Residue number B
94
Peptide name
Human nkt tcr beta chain
Ligandability
Cysteine 24 of Human nkt tcr beta chain
Cysteine 94 of Human nkt tcr beta chain
Cysteine 24 in protein A could not be asigned to a Uniprot residue.
6v80 I 21 I 89
A redox-regulated disulphide may form within Human nkt tcr beta chain between cysteines 26 and 94 (21 and 89 respectively in this structure).
Details
Redox score ?
81
PDB code
6v80
Structure name
crystal structure of human cd1d presenting alpha-galactosylceramide in complex with nkt12 tcr and vhh nanobody 1d12
Structure deposition date
2019-12-10
Thiol separation (Å)
2
Half-sphere exposure sum ?
83
Minimum pKa ?
nan
% buried
nan
Peptide accession
K7N5M4
Residue number A
26
Residue number B
94
Peptide name
Human nkt tcr beta chain
Ligandability
Cysteine 26 of Human nkt tcr beta chain
Cysteine 94 of Human nkt tcr beta chain
4mnh A 147 A 212
A redox-regulated disulphide may form within Human nkt tcr beta chain between cysteines 150 and 215 (147 and 212 respectively in this structure).
Details
Redox score ?
77
PDB code
4mnh
Structure name
structure of the dp10
Structure deposition date
2013-09-10
Thiol separation (Å)
2
Half-sphere exposure sum ?
90
Minimum pKa ?
nan
% buried
nan
Peptide accession
K7N5M4
Residue number A
150
Residue number B
215
Peptide name
Human nkt tcr beta chain
Ligandability
Cysteine 150 of Human nkt tcr beta chain
Cysteine 215 of Human nkt tcr beta chain
6bj8 H 145 H 189
A redox-regulated disulphide may form within Human nkt tcr beta chain between cysteines 150 and 94 (145 and 189 respectively in this structure). However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?
Details
Redox score ?
25
PDB code
6bj8
Structure name
tcr55 in complex with pep20/hla-b35
Structure deposition date
2017-11-05
Thiol separation (Å)
9
Half-sphere exposure sum ?
92
Minimum pKa ?
14
% buried
nan
Peptide accession
K7N5M4
Residue number A
150
Residue number B
94
Peptide name
Human nkt tcr beta chain
Ligandability
Cysteine 150 of Human nkt tcr beta chain
Cysteine 94 of Human nkt tcr beta chain
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