ReDisulphID

a tool for identifying drug-targetable redox-active disulphides

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DNA dC->dU-editing enzyme APOBEC-3G

Intramolecular
Cysteine 287 and cysteine 290
Cysteine 97 and cysteine 100
Cysteine 36 and cysteine 160
Cysteine 221 and cysteine 345
Cysteine 221 and cysteine 280
Cysteine 261 and cysteine 280
Cysteine 280 and cysteine 307
Cysteine 261 and cysteine 290
Cysteine 280 and cysteine 290
Cysteine 36 and cysteine 37
Cysteine 280 and cysteine 345
A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 287 and 290.

Details

Redox score ?
88
PDB code
7uu5
Structure name
crystal structure of apobec3g complex with 5'-overhang dsrna
Structure deposition date
2022-04-28
Thiol separation (Å)
3
Half-sphere exposure sum ?
68
Minimum pKa ?
2
% buried
73
Peptide accession
M1GSK9
Residue number A
287
Residue number B
290
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 287 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 290 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 97 and 100.

Details

Redox score ?
85
PDB code
5k82
Structure name
crystal structure of a primate apobec3g n-terminal domain
Structure deposition date
2016-05-27
Thiol separation (Å)
3
Half-sphere exposure sum ?
70
Minimum pKa ?
3
% buried
66
Peptide accession
M1GSK9
Residue number A
97
Residue number B
100
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 97 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 100 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 36 and 160.

Details

Redox score ?
62
PDB code
5k82
Structure name
crystal structure of a primate apobec3g n-terminal domain
Structure deposition date
2016-05-27
Thiol separation (Å)
4
Half-sphere exposure sum ?
88
Minimum pKa ?
9
% buried
100
Peptide accession
M1GSK9
Residue number A
36
Residue number B
160
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 36 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 160 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 221 and 345. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
60
PDB code
6p40
Structure name
crystal structure of full length apobec3g fkl
Structure deposition date
2019-05-25
Thiol separation (Å)
5
Half-sphere exposure sum ?
86
Minimum pKa ?
9
% buried
100
Peptide accession
M1GSK9
Residue number A
221
Residue number B
345
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 221 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 345 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 221 and 280. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
38
PDB code
6p3z
Structure name
crystal structure of full length apobec3g e/q (ph 5
Structure deposition date
2019-05-25
Thiol separation (Å)
9
Half-sphere exposure sum ?
81
Minimum pKa ?
9
% buried
100
Peptide accession
M1GSK9
Residue number A
221
Residue number B
280
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 221 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 280 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 261 and 280. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
37
PDB code
6p3y
Structure name
crystal structure of full length apobec3g e/q (ph 7
Structure deposition date
2019-05-25
Thiol separation (Å)
9
Half-sphere exposure sum ?
69
Minimum pKa ?
12
% buried
90
Peptide accession
M1GSK9
Residue number A
261
Residue number B
280
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 261 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 280 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 280 and 307. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
35
PDB code
7uu4
Structure name
crystal structure of apobec3g complex with ssrna
Structure deposition date
2022-04-28
Thiol separation (Å)
9
Half-sphere exposure sum ?
81
Minimum pKa ?
10
% buried
82
Peptide accession
M1GSK9
Residue number A
280
Residue number B
307
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 280 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 307 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 261 and 290. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
34
PDB code
7uu3
Structure name
crystal structure of apobec3g complex with 3'overhangs rna-complex
Structure deposition date
2022-04-28
Thiol separation (Å)
9
Half-sphere exposure sum ?
66
Minimum pKa ?
12
% buried
76
Peptide accession
M1GSK9
Residue number A
261
Residue number B
290
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 261 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 290 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 280 and 290. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
30
PDB code
6p3x
Structure name
crystal structure of full length apobec3g e/q (ph 7
Structure deposition date
2019-05-25
Thiol separation (Å)
10
Half-sphere exposure sum ?
70
Minimum pKa ?
12
% buried
80
Peptide accession
M1GSK9
Residue number A
280
Residue number B
290
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 280 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 290 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 36 and 37. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
28
PDB code
5k82
Structure name
crystal structure of a primate apobec3g n-terminal domain
Structure deposition date
2016-05-27
Thiol separation (Å)
9
Half-sphere exposure sum ?
88
Minimum pKa ?
13
% buried
100
Peptide accession
M1GSK9
Residue number A
36
Residue number B
37
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 36 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 37 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within DNA dC->dU-editing enzyme APOBEC-3G between cysteines 280 and 345. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
26
PDB code
7uu3
Structure name
crystal structure of apobec3g complex with 3'overhangs rna-complex
Structure deposition date
2022-04-28
Thiol separation (Å)
10
Half-sphere exposure sum ?
84
Minimum pKa ?
13
% buried
100
Peptide accession
M1GSK9
Residue number A
280
Residue number B
345
Peptide name
DNA dC->dU-editing enzyme APOBEC-3G

Ligandability

Cysteine 280 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 345 of DNA dC->dU-editing enzyme APOBEC-3G

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

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