Neuropilin-1
Intermolecular
Cysteine 275 and cysteine 275
Cysteine 424 and cysteine 275
Cysteine 424 and cysteine 424
Intramolecular
Cysteine 82 and cysteine 104
Cysteine 206 and cysteine 228
Cysteine 721 and cysteine 809
Cysteine 27 and cysteine 54
Cysteine 650 and cysteine 661
Cysteine 431 and cysteine 583
Cysteine 147 and cysteine 173
Cysteine 275 and cysteine 424
7jjc A 275 B 275
A redox-regulated disulphide may form between two units of Neuropilin-1 at cysteines 275 and 275. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?
Details
Redox score ?
46
PDB code
7jjc
Structure name
crystal structure of neuropilin-1 b1 domain in complex with sars-cov-2 s1 c-end rule (cendr) peptide
Structure deposition date
2020-07-25
Thiol separation (Å)
9
Half-sphere exposure sum ?
73
Minimum pKa ?
nan
% buried
nan
Peptide A name
Neuropilin-1
Peptide B name
Neuropilin-1
Peptide A accession
O14786
Peptide B accession
O14786
Peptide A residue number
275
Peptide B residue number
275
Ligandability
7jjc C 424 D 275
A redox-regulated disulphide may form between two units of Neuropilin-1 at cysteines 424 and 275. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?
Details
Redox score ?
40
PDB code
7jjc
Structure name
crystal structure of neuropilin-1 b1 domain in complex with sars-cov-2 s1 c-end rule (cendr) peptide
Structure deposition date
2020-07-25
Thiol separation (Å)
10
Half-sphere exposure sum ?
67
Minimum pKa ?
nan
% buried
nan
Peptide A name
Neuropilin-1
Peptide B name
Neuropilin-1
Peptide A accession
O14786
Peptide B accession
O14786
Peptide A residue number
424
Peptide B residue number
275
Ligandability
Cysteine 424 of Neuropilin-1
Cysteine 275 of Neuropilin-1
7jjc A 424 B 424
A redox-regulated disulphide may form between two units of Neuropilin-1 at cysteines 424 and 424. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?
Details
Redox score ?
37
PDB code
7jjc
Structure name
crystal structure of neuropilin-1 b1 domain in complex with sars-cov-2 s1 c-end rule (cendr) peptide
Structure deposition date
2020-07-25
Thiol separation (Å)
10
Half-sphere exposure sum ?
68
Minimum pKa ?
nan
% buried
nan
Peptide A name
Neuropilin-1
Peptide B name
Neuropilin-1
Peptide A accession
O14786
Peptide B accession
O14786
Peptide A residue number
424
Peptide B residue number
424
Ligandability
4gza H 82 H 104
A redox-regulated disulphide may form within Neuropilin-1 between cysteines 82 and 104.
Details
Redox score ?
88
PDB code
4gza
Structure name
complex of mouse plexin a2 - semaphorin 3a - neuropilin-1
Structure deposition date
2012-09-06
Thiol separation (Å)
2
Half-sphere exposure sum ?
55
Minimum pKa ?
nan
% buried
nan
Peptide accession
P97333
Residue number A
82
Residue number B
104
Peptide name
Neuropilin-1
Ligandability
Cysteine 82 of Neuropilin-1
Cysteine 104 of Neuropilin-1
4gz9 A 206 A 228
A redox-regulated disulphide may form within Neuropilin-1 between cysteines 206 and 228.
Details
Redox score ?
85
PDB code
4gz9
Structure name
mouse neuropilin-1, extracellular domains 1-4 (a1a2b1b2)
Structure deposition date
2012-09-06
Thiol separation (Å)
2
Half-sphere exposure sum ?
61
Minimum pKa ?
nan
% buried
nan
Peptide accession
P97333
Residue number A
206
Residue number B
228
Peptide name
Neuropilin-1
Ligandability
Cysteine 206 of Neuropilin-1
Cysteine 228 of Neuropilin-1
5l73 A 721 A 809
A redox-regulated disulphide may form within Neuropilin-1 between cysteines 721 and 809.
Details
Redox score ?
85
PDB code
5l73
Structure name
mam domain of human neuropilin-1
Structure deposition date
2016-06-01
Thiol separation (Å)
2
Half-sphere exposure sum ?
57
Minimum pKa ?
nan
% buried
nan
Peptide accession
O14786
Residue number A
721
Residue number B
809
Peptide name
Neuropilin-1
Ligandability
Cysteine 721 of Neuropilin-1
Cysteine 809 of Neuropilin-1
4gza H 27 H 54
A redox-regulated disulphide may form within Neuropilin-1 between cysteines 27 and 54.
Details
Redox score ?
84
PDB code
4gza
Structure name
complex of mouse plexin a2 - semaphorin 3a - neuropilin-1
Structure deposition date
2012-09-06
Thiol separation (Å)
2
Half-sphere exposure sum ?
54
Minimum pKa ?
nan
% buried
nan
Peptide accession
P97333
Residue number A
27
Residue number B
54
Peptide name
Neuropilin-1
Ligandability
Cysteine 27 of Neuropilin-1
Cysteine 54 of Neuropilin-1
5l73 A 650 A 661
A redox-regulated disulphide may form within Neuropilin-1 between cysteines 650 and 661.
Details
Redox score ?
84
PDB code
5l73
Structure name
mam domain of human neuropilin-1
Structure deposition date
2016-06-01
Thiol separation (Å)
2
Half-sphere exposure sum ?
61
Minimum pKa ?
nan
% buried
nan
Peptide accession
O14786
Residue number A
650
Residue number B
661
Peptide name
Neuropilin-1
Ligandability
Cysteine 650 of Neuropilin-1
Cysteine 661 of Neuropilin-1
2orx A 431 A 583
A redox-regulated disulphide may form within Neuropilin-1 between cysteines 431 and 583.
Details
Redox score ?
83
PDB code
2orx
Structure name
structural basis for ligand binding and heparin mediated activation of neuropilin
Structure deposition date
2007-02-05
Thiol separation (Å)
2
Half-sphere exposure sum ?
52
Minimum pKa ?
nan
% buried
nan
Peptide accession
Q9QWJ9
Residue number A
431
Residue number B
583
Peptide name
Neuropilin-1
Ligandability
Cysteine 431 of Neuropilin-1
Cysteine 583 of Neuropilin-1
4gz9 A 147 A 173
A redox-regulated disulphide may form within Neuropilin-1 between cysteines 147 and 173.
Details
Redox score ?
82
PDB code
4gz9
Structure name
mouse neuropilin-1, extracellular domains 1-4 (a1a2b1b2)
Structure deposition date
2012-09-06
Thiol separation (Å)
2
Half-sphere exposure sum ?
54
Minimum pKa ?
nan
% buried
nan
Peptide accession
P97333
Residue number A
147
Residue number B
173
Peptide name
Neuropilin-1
Ligandability
Cysteine 147 of Neuropilin-1
Cysteine 173 of Neuropilin-1
4gz9 A 275 A 424
A redox-regulated disulphide may form within Neuropilin-1 between cysteines 275 and 424.
Details
Redox score ?
82
PDB code
4gz9
Structure name
mouse neuropilin-1, extracellular domains 1-4 (a1a2b1b2)
Structure deposition date
2012-09-06
Thiol separation (Å)
2
Half-sphere exposure sum ?
61
Minimum pKa ?
nan
% buried
nan
Peptide accession
P97333
Residue number A
275
Residue number B
424
Peptide name
Neuropilin-1
Ligandability
Cysteine 275 of Neuropilin-1
Cysteine 424 of Neuropilin-1
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