ReDisulphID

a tool for identifying drug-targetable redox-active disulphides

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Ski oncogene

Intramolecular
Cysteine 247 and cysteine 250
Cysteine 228 and cysteine 247
Cysteine 153 and cysteine 174
Cysteine 143 and cysteine 150
Cysteine 122 and cysteine 174
Cysteine 101 and cysteine 112
Cysteine 228 and cysteine 250
Cysteine 122 and cysteine 153
Cysteine 143 and cysteine 186 L
Cysteine 112 and cysteine 122
A redox-regulated disulphide may form within Ski oncogene between cysteines 247 and 250.

Details

Redox score ?
94
PDB code
1mr1
Structure name
crystal structure of a smad4-ski complex
Structure deposition date
2002-09-17
Thiol separation (Å)
4
Half-sphere exposure sum ?
54
Minimum pKa ?
1
% buried
33
Peptide accession
P12755
Residue number A
247
Residue number B
250
Peptide name
Ski oncogene

Ligandability

Cysteine 247 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 250 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ski oncogene between cysteines 228 and 247.

Details

Redox score ?
90
PDB code
1mr1
Structure name
crystal structure of a smad4-ski complex
Structure deposition date
2002-09-17
Thiol separation (Å)
4
Half-sphere exposure sum ?
69
Minimum pKa ?
1
% buried
60
Peptide accession
P12755
Residue number A
228
Residue number B
247
Peptide name
Ski oncogene

Ligandability

Cysteine 228 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 247 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ski oncogene between cysteines 153 and 174.

Details

Redox score ?
81
PDB code
1sbx
Structure name
crystal structure of the dachshund-homology domain of human ski
Structure deposition date
2004-02-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
64
Minimum pKa ?
8
% buried
48
Peptide accession
P12755
Residue number A
153
Residue number B
174
Peptide name
Ski oncogene

Ligandability

Cysteine 153 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 174 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ski oncogene between cysteines 143 and 150.

Details

Redox score ?
70
PDB code
1sbx
Structure name
crystal structure of the dachshund-homology domain of human ski
Structure deposition date
2004-02-11
Thiol separation (Å)
5
Half-sphere exposure sum ?
50
Minimum pKa ?
10
% buried
39
Peptide accession
P12755
Residue number A
143
Residue number B
150
Peptide name
Ski oncogene

Ligandability

Cysteine 143 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 150 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ski oncogene between cysteines 122 and 174.

Details

Redox score ?
68
PDB code
1sbx
Structure name
crystal structure of the dachshund-homology domain of human ski
Structure deposition date
2004-02-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
75
Minimum pKa ?
12
% buried
58
Peptide accession
P12755
Residue number A
122
Residue number B
174
Peptide name
Ski oncogene

Ligandability

Cysteine 122 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 174 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ski oncogene between cysteines 101 and 112.

Details

Redox score ?
66
PDB code
1sbx
Structure name
crystal structure of the dachshund-homology domain of human ski
Structure deposition date
2004-02-11
Thiol separation (Å)
5
Half-sphere exposure sum ?
58
Minimum pKa ?
9
% buried
28
Peptide accession
P12755
Residue number A
101
Residue number B
112
Peptide name
Ski oncogene

Ligandability

Cysteine 101 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 112 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ski oncogene between cysteines 228 and 250.

Details

Redox score ?
64
PDB code
1mr1
Structure name
crystal structure of a smad4-ski complex
Structure deposition date
2002-09-17
Thiol separation (Å)
7
Half-sphere exposure sum ?
53
Minimum pKa ?
7
% buried
22
Peptide accession
P12755
Residue number A
228
Residue number B
250
Peptide name
Ski oncogene

Ligandability

Cysteine 228 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 250 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ski oncogene between cysteines 122 and 153.

Details

Redox score ?
62
PDB code
1sbx
Structure name
crystal structure of the dachshund-homology domain of human ski
Structure deposition date
2004-02-11
Thiol separation (Å)
6
Half-sphere exposure sum ?
73
Minimum pKa ?
8
% buried
57
Peptide accession
P12755
Residue number A
122
Residue number B
153
Peptide name
Ski oncogene

Ligandability

Cysteine 122 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 153 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ski oncogene between cysteines 143 and 186. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
41
PDB code
1sbx
Structure name
crystal structure of the dachshund-homology domain of human ski
Structure deposition date
2004-02-11
Thiol separation (Å)
9
Half-sphere exposure sum ?
58
Minimum pKa ?
11
% buried
43
Peptide accession
P12755
Residue number A
143
Residue number B
186
Peptide name
Ski oncogene

Ligandability

Cysteine 143 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 186 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ski oncogene between cysteines 112 and 122. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
38
PDB code
1sbx
Structure name
crystal structure of the dachshund-homology domain of human ski
Structure deposition date
2004-02-11
Thiol separation (Å)
9
Half-sphere exposure sum ?
79
Minimum pKa ?
12
% buried
55
Peptide accession
P12755
Residue number A
112
Residue number B
122
Peptide name
Ski oncogene

Ligandability

Cysteine 112 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 122 of Ski oncogene

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

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