ReDisulphID

a tool for identifying drug-targetable redox-active disulphides

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Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Intramolecular
Cysteine 200 and cysteine 256
Cysteine 200 and cysteine 243
Cysteine 214 and cysteine 341
Cysteine 214 and cysteine 265
A redox-regulated disulphide may form within Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic between cysteines 200 and 256.

Details

Redox score ?
61
PDB code
1wpq
Structure name
ternary complex of glycerol 3-phosphate dehydrogenase 1 with nad and dihydroxyactone
Structure deposition date
2004-09-10
Thiol separation (Å)
4
Half-sphere exposure sum ?
104
Minimum pKa ?
9
% buried
100
Peptide accession
P21695
Residue number A
200
Residue number B
256
Peptide name
Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Ligandability

Cysteine 200 of Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 256 of Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic between cysteines 200 and 243. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
38
PDB code
1x0v
Structure name
crystal structure of homo sapien glycerol-3-phosphate dehydrogenase 1
Structure deposition date
2005-03-30
Thiol separation (Å)
9
Half-sphere exposure sum ?
75
Minimum pKa ?
12
% buried
84
Peptide accession
P21695
Residue number A
200
Residue number B
243
Peptide name
Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Ligandability

Cysteine 200 of Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 243 of Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic between cysteines 214 and 341. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
37
PDB code
6e90
Structure name
ternary complex of human glycerol 3-phosphate dehydrogenase
Structure deposition date
2018-07-31
Thiol separation (Å)
9
Half-sphere exposure sum ?
71
Minimum pKa ?
11
% buried
66
Peptide accession
P21695
Residue number A
214
Residue number B
341
Peptide name
Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Ligandability

Cysteine 214 of Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 341 of Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic between cysteines 214 and 265. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
25
PDB code
6e90
Structure name
ternary complex of human glycerol 3-phosphate dehydrogenase
Structure deposition date
2018-07-31
Thiol separation (Å)
10
Half-sphere exposure sum ?
89
Minimum pKa ?
12
% buried
100
Peptide accession
P21695
Residue number A
214
Residue number B
265
Peptide name
Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Ligandability

Cysteine 214 of Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 265 of Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

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