ReDisulphID

a tool for identifying drug-targetable redox-active disulphides

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Nucleosome-remodeling factor subunit BPTF

Intramolecular
Cysteine 2885 and cysteine 2888
Cysteine 2885 and cysteine 2915
Cysteine 2885 and cysteine 2912
Cysteine 2870 and cysteine 2872
Cysteine 2888 and cysteine 2915
Cysteine 2870 and cysteine 2896
Cysteine 2888 and cysteine 2912
Cysteine 2912 and cysteine 2915
Cysteine 2872 and cysteine 2896
Cysteine 2870 and cysteine 2912
Cysteine 3003 and cysteine 3016
A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2885 and 2888 (26 and 29 respectively in this structure).

Details

Redox score ?
87
PDB code
6aze
Structure name
crystal structure of the bptf phd-bromodomain module bound to h3kc4me3 methyl lysine analog
Structure deposition date
2017-09-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
50
Minimum pKa ?
6
% buried
16
Peptide accession
Q12830
Residue number A
2885
Residue number B
2888
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2885 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2888 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2885 and 2915 (26 and 56 respectively in this structure).

Details

Redox score ?
86
PDB code
2ri7
Structure name
crystal structure of phd finger-linker-bromodomain y17e mutant from human bptf in the h3(1-9)k4me2 bound state
Structure deposition date
2007-10-10
Thiol separation (Å)
4
Half-sphere exposure sum ?
49
Minimum pKa ?
6
% buried
8
Peptide accession
Q12830
Residue number A
2885
Residue number B
2915
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2885 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2915 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2885 and 2912 (26 and 53 respectively in this structure).

Details

Redox score ?
86
PDB code
2ri7
Structure name
crystal structure of phd finger-linker-bromodomain y17e mutant from human bptf in the h3(1-9)k4me2 bound state
Structure deposition date
2007-10-10
Thiol separation (Å)
4
Half-sphere exposure sum ?
62
Minimum pKa ?
6
% buried
18
Peptide accession
Q12830
Residue number A
2885
Residue number B
2912
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2885 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2912 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2870 and 2872 (11 and 13 respectively in this structure).

Details

Redox score ?
85
PDB code
2f6j
Structure name
crystal structure of phd finger-linker-bromodomain fragment of human bptf in the h3(1-15)k4me3 bound state
Structure deposition date
2005-11-29
Thiol separation (Å)
4
Half-sphere exposure sum ?
46
Minimum pKa ?
7
% buried
15
Peptide accession
Q7Z7D6
Residue number A
2870
Residue number B
2872
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2870 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2872 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2888 and 2915 (29 and 56 respectively in this structure).

Details

Redox score ?
84
PDB code
3qzv
Structure name
crystal structure of bptf phd-linker-bromo in complex with histone h4k12ac peptide
Structure deposition date
2011-03-07
Thiol separation (Å)
4
Half-sphere exposure sum ?
39
Minimum pKa ?
7
% buried
0
Peptide accession
Q12830
Residue number A
2888
Residue number B
2915
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2888 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2915 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2870 and 2896 (11 and 37 respectively in this structure).

Details

Redox score ?
84
PDB code
2f6j
Structure name
crystal structure of phd finger-linker-bromodomain fragment of human bptf in the h3(1-15)k4me3 bound state
Structure deposition date
2005-11-29
Thiol separation (Å)
4
Half-sphere exposure sum ?
55
Minimum pKa ?
6
% buried
16
Peptide accession
Q7Z7D6
Residue number A
2870
Residue number B
2896
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2870 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2896 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2888 and 2912 (29 and 53 respectively in this structure).

Details

Redox score ?
83
PDB code
6aze
Structure name
crystal structure of the bptf phd-bromodomain module bound to h3kc4me3 methyl lysine analog
Structure deposition date
2017-09-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
52
Minimum pKa ?
7
% buried
16
Peptide accession
Q12830
Residue number A
2888
Residue number B
2912
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2888 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2912 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2912 and 2915 (53 and 56 respectively in this structure).

Details

Redox score ?
82
PDB code
6aze
Structure name
crystal structure of the bptf phd-bromodomain module bound to h3kc4me3 methyl lysine analog
Structure deposition date
2017-09-11
Thiol separation (Å)
3
Half-sphere exposure sum ?
53
Minimum pKa ?
9
% buried
9
Peptide accession
Q12830
Residue number A
2912
Residue number B
2915
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2912 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2915 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2872 and 2896 (13 and 37 respectively in this structure).

Details

Redox score ?
78
PDB code
2fsa
Structure name
crystal structure of phd finger-linker-bromodomain fragment of human bptf in the h3(1-15)k4me2 bound state
Structure deposition date
2006-01-21
Thiol separation (Å)
4
Half-sphere exposure sum ?
39
Minimum pKa ?
8
% buried
3
Peptide accession
Q7Z7D6
Residue number A
2872
Residue number B
2896
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2872 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2896 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 2870 and 2912 (11 and 53 respectively in this structure). However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
54
PDB code
2fsa
Structure name
crystal structure of phd finger-linker-bromodomain fragment of human bptf in the h3(1-15)k4me2 bound state
Structure deposition date
2006-01-21
Thiol separation (Å)
9
Half-sphere exposure sum ?
59
Minimum pKa ?
7
% buried
26
Peptide accession
Q7Z7D6
Residue number A
2870
Residue number B
2912
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 2870 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 2912 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Nucleosome-remodeling factor subunit BPTF between cysteines 3003 and 3016 (144 and 157 respectively in this structure). However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
52
PDB code
2f6n
Structure name
crystal structure of phd finger-linker-bromodomain fragment of human bptf in the free form
Structure deposition date
2005-11-29
Thiol separation (Å)
7
Half-sphere exposure sum ?
62
Minimum pKa ?
10
% buried
47
Peptide accession
Q7Z7D6
Residue number A
3003
Residue number B
3016
Peptide name
Nucleosome-remodeling factor subunit BPTF

Ligandability

Cysteine 3003 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 3016 of Nucleosome-remodeling factor subunit BPTF

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

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