ReDisulphID

a tool for identifying drug-targetable redox-active disulphides

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Ig-like domain-containing protein

Intermolecular
Cysteine 245 and cysteine 239 of Ig-like domain-containing protein
Cysteine 245 and cysteine 232 of IGL@ protein
Intramolecular
Cysteine 169 and cysteine 225
Cysteine 392 and cysteine 115
Cysteine 41 and cysteine 115
A redox-regulated disulphide may form between two units of Ig-like domain-containing protein at cysteines 245 and 239 (217 and 215 respectively in this structure).

Details

Redox score ?
94
PDB code
5vkk
Structure name
crystal structure of fab fragment of anti-cd22 epratuzumab
Structure deposition date
2017-04-21
Thiol separation (Å)
2
Half-sphere exposure sum ?
nan
Minimum pKa ?
nan
% buried
nan
Peptide A name
Ig-like domain-containing protein
Peptide B name
Ig-like domain-containing protein
Peptide A accession
Q6N089
Peptide B accession
Q8TCD0
Peptide A residue number
245
Peptide B residue number
239

Ligandability

Cysteine 245 of Ig-like domain-containing protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 239 of Ig-like domain-containing protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form between cysteine 245 of Ig-like domain-containing protein and cysteine 232 of IGL@ protein (211 and 212 respectively in this structure).

Details

Redox score ?
93
PDB code
6v8z
Structure name
vrc03 and 10-1074 bound bg505 f14 hiv-1 sosip envelope trimer structure
Structure deposition date
2019-12-12
Thiol separation (Å)
2
Half-sphere exposure sum ?
nan
Minimum pKa ?
nan
% buried
nan
Peptide A name
Ig-like domain-containing protein
Peptide B name
IGL@ protein
Peptide A accession
Q6N089
Peptide B accession
Q8N5F4
Peptide A residue number
245
Peptide B residue number
232

Ligandability

Cysteine 245 of Ig-like domain-containing protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 232 of IGL@ protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ig-like domain-containing protein between cysteines 169 and 225 (140 and 196 respectively in this structure).

Details

Redox score ?
80
PDB code
5wko
Structure name
crystal structure of antibody 27f3 recognizing the ha from a/california/04/2009 (h1n1) influenza virus
Structure deposition date
2017-07-25
Thiol separation (Å)
2
Half-sphere exposure sum ?
83
Minimum pKa ?
nan
% buried
nan
Peptide accession
Q6N089
Residue number A
169
Residue number B
225
Peptide name
Ig-like domain-containing protein

Ligandability

Cysteine 169 of Ig-like domain-containing protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 225 of Ig-like domain-containing protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ig-like domain-containing protein between cysteines 392 and 115 (22 and 92 respectively in this structure).

Details

Redox score ?
79
PDB code
1u6a
Structure name
crystal structure of the broadly neutralizing anti-hiv fab f105
Structure deposition date
2004-07-29
Thiol separation (Å)
2
Half-sphere exposure sum ?
85
Minimum pKa ?
nan
% buried
nan
Peptide accession
Q6N089
Residue number A
392
Residue number B
115
Peptide name
Ig-like domain-containing protein

Ligandability

Cysteine 392 of Ig-like domain-containing protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 115 of Ig-like domain-containing protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Ig-like domain-containing protein between cysteines 41 and 115 (22 and 96 respectively in this structure).

Details

Redox score ?
79
PDB code
5w1m
Structure name
macv gp1 cr1-07 fab complex
Structure deposition date
2017-06-03
Thiol separation (Å)
2
Half-sphere exposure sum ?
82
Minimum pKa ?
nan
% buried
nan
Peptide accession
Q6N089
Residue number A
41
Residue number B
115
Peptide name
Ig-like domain-containing protein

Ligandability

Cysteine 41 of Ig-like domain-containing protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 115 of Ig-like domain-containing protein

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

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