ReDisulphID

a tool for identifying drug-targetable redox-active disulphides

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Acid sphingomyelinase-like phosphodiesterase 3a

Intramolecular
Cysteine 430 and cysteine 443
Cysteine 62 and cysteine 81
Cysteine 420 and cysteine 424
A redox-regulated disulphide may form within Acid sphingomyelinase-like phosphodiesterase 3a between cysteines 430 and 443.

Details

Redox score ?
86
PDB code
5ebb
Structure name
structure of human sphingomyelinase phosphodiesterase like 3a (smpdl3a) with zn2+
Structure deposition date
2015-10-19
Thiol separation (Å)
2
Half-sphere exposure sum ?
nan
Minimum pKa ?
nan
% buried
nan
Peptide accession
Q92484
Residue number A
430
Residue number B
443
Peptide name
Acid sphingomyelinase-like phosphodiesterase 3a

Ligandability

Cysteine 430 of Acid sphingomyelinase-like phosphodiesterase 3a

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 443 of Acid sphingomyelinase-like phosphodiesterase 3a

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Acid sphingomyelinase-like phosphodiesterase 3a between cysteines 62 and 81.

Details

Redox score ?
83
PDB code
5ebb
Structure name
structure of human sphingomyelinase phosphodiesterase like 3a (smpdl3a) with zn2+
Structure deposition date
2015-10-19
Thiol separation (Å)
2
Half-sphere exposure sum ?
85
Minimum pKa ?
nan
% buried
nan
Peptide accession
Q92484
Residue number A
62
Residue number B
81
Peptide name
Acid sphingomyelinase-like phosphodiesterase 3a

Ligandability

Cysteine 62 of Acid sphingomyelinase-like phosphodiesterase 3a

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 81 of Acid sphingomyelinase-like phosphodiesterase 3a

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Acid sphingomyelinase-like phosphodiesterase 3a between cysteines 420 and 424.

Details

Redox score ?
70
PDB code
5ebb
Structure name
structure of human sphingomyelinase phosphodiesterase like 3a (smpdl3a) with zn2+
Structure deposition date
2015-10-19
Thiol separation (Å)
5
Half-sphere exposure sum ?
46
Minimum pKa ?
11
% buried
28
Peptide accession
Q92484
Residue number A
420
Residue number B
424
Peptide name
Acid sphingomyelinase-like phosphodiesterase 3a

Ligandability

Cysteine 420 of Acid sphingomyelinase-like phosphodiesterase 3a

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 424 of Acid sphingomyelinase-like phosphodiesterase 3a

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

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