E3 ubiquitin-protein ligase TRIM56
Intramolecular
Cysteine 36 and cysteine 56
Cysteine 56 and cysteine 59
Cysteine 24 and cysteine 41
Cysteine 41 and cysteine 44
Cysteine 36 and cysteine 59
Cysteine 21 and cysteine 41
Cysteine 21 and cysteine 44
Cysteine 24 and cysteine 44
Cysteine 21 and cysteine 24
5jw7 B 36 B 56
A redox-regulated disulphide may form within E3 ubiquitin-protein ligase TRIM56 between cysteines 36 and 56.
Details
Redox score ?
90
PDB code
5jw7
Structure name
crystal structure of sopa-trim56 complex
Structure deposition date
2016-05-11
Thiol separation (Å)
3
Half-sphere exposure sum ?
49
Minimum pKa ?
6
% buried
0
Peptide accession
Q9BRZ2
Residue number A
36
Residue number B
56
Peptide name
E3 ubiquitin-protein ligase TRIM56
Ligandability
Cysteine 36 of E3 ubiquitin-protein ligase TRIM56
Cysteine 56 of E3 ubiquitin-protein ligase TRIM56
5jw7 B 56 B 59
A redox-regulated disulphide may form within E3 ubiquitin-protein ligase TRIM56 between cysteines 56 and 59.
Details
Redox score ?
81
PDB code
5jw7
Structure name
crystal structure of sopa-trim56 complex
Structure deposition date
2016-05-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
46
Minimum pKa ?
6
% buried
0
Peptide accession
Q9BRZ2
Residue number A
56
Residue number B
59
Peptide name
E3 ubiquitin-protein ligase TRIM56
Ligandability
Cysteine 56 of E3 ubiquitin-protein ligase TRIM56
Cysteine 59 of E3 ubiquitin-protein ligase TRIM56
5jw7 B 24 B 41
A redox-regulated disulphide may form within E3 ubiquitin-protein ligase TRIM56 between cysteines 24 and 41.
Details
Redox score ?
76
PDB code
5jw7
Structure name
crystal structure of sopa-trim56 complex
Structure deposition date
2016-05-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
77
Minimum pKa ?
6
% buried
66
Peptide accession
Q9BRZ2
Residue number A
24
Residue number B
41
Peptide name
E3 ubiquitin-protein ligase TRIM56
Ligandability
Cysteine 24 of E3 ubiquitin-protein ligase TRIM56
Cysteine 41 of E3 ubiquitin-protein ligase TRIM56
5jw7 B 41 B 44
A redox-regulated disulphide may form within E3 ubiquitin-protein ligase TRIM56 between cysteines 41 and 44.
Details
Redox score ?
74
PDB code
5jw7
Structure name
crystal structure of sopa-trim56 complex
Structure deposition date
2016-05-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
80
Minimum pKa ?
6
% buried
59
Peptide accession
Q9BRZ2
Residue number A
41
Residue number B
44
Peptide name
E3 ubiquitin-protein ligase TRIM56
Ligandability
Cysteine 41 of E3 ubiquitin-protein ligase TRIM56
Cysteine 44 of E3 ubiquitin-protein ligase TRIM56
5jw7 B 36 B 59
A redox-regulated disulphide may form within E3 ubiquitin-protein ligase TRIM56 between cysteines 36 and 59.
Details
Redox score ?
74
PDB code
5jw7
Structure name
crystal structure of sopa-trim56 complex
Structure deposition date
2016-05-11
Thiol separation (Å)
5
Half-sphere exposure sum ?
35
Minimum pKa ?
9
% buried
0
Peptide accession
Q9BRZ2
Residue number A
36
Residue number B
59
Peptide name
E3 ubiquitin-protein ligase TRIM56
Ligandability
Cysteine 36 of E3 ubiquitin-protein ligase TRIM56
Cysteine 59 of E3 ubiquitin-protein ligase TRIM56
5jw7 B 21 B 41
A redox-regulated disulphide may form within E3 ubiquitin-protein ligase TRIM56 between cysteines 21 and 41.
Details
Redox score ?
74
PDB code
5jw7
Structure name
crystal structure of sopa-trim56 complex
Structure deposition date
2016-05-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
81
Minimum pKa ?
6
% buried
nan
Peptide accession
Q9BRZ2
Residue number A
21
Residue number B
41
Peptide name
E3 ubiquitin-protein ligase TRIM56
Ligandability
Cysteine 21 of E3 ubiquitin-protein ligase TRIM56
Cysteine 41 of E3 ubiquitin-protein ligase TRIM56
5jw7 B 21 B 44
A redox-regulated disulphide may form within E3 ubiquitin-protein ligase TRIM56 between cysteines 21 and 44.
Details
Redox score ?
64
PDB code
5jw7
Structure name
crystal structure of sopa-trim56 complex
Structure deposition date
2016-05-11
Thiol separation (Å)
3
Half-sphere exposure sum ?
83
Minimum pKa ?
14
% buried
nan
Peptide accession
Q9BRZ2
Residue number A
21
Residue number B
44
Peptide name
E3 ubiquitin-protein ligase TRIM56
Ligandability
Cysteine 21 of E3 ubiquitin-protein ligase TRIM56
Cysteine 44 of E3 ubiquitin-protein ligase TRIM56
5jw7 B 24 B 44
A redox-regulated disulphide may form within E3 ubiquitin-protein ligase TRIM56 between cysteines 24 and 44. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?
Details
Redox score ?
56
PDB code
5jw7
Structure name
crystal structure of sopa-trim56 complex
Structure deposition date
2016-05-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
79
Minimum pKa ?
14
% buried
70
Peptide accession
Q9BRZ2
Residue number A
24
Residue number B
44
Peptide name
E3 ubiquitin-protein ligase TRIM56
Ligandability
Cysteine 24 of E3 ubiquitin-protein ligase TRIM56
Cysteine 44 of E3 ubiquitin-protein ligase TRIM56
5jw7 B 21 B 24
A redox-regulated disulphide may form within E3 ubiquitin-protein ligase TRIM56 between cysteines 21 and 24. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?
Details
Redox score ?
44
PDB code
5jw7
Structure name
crystal structure of sopa-trim56 complex
Structure deposition date
2016-05-11
Thiol separation (Å)
4
Half-sphere exposure sum ?
80
Minimum pKa ?
23
% buried
nan
Peptide accession
Q9BRZ2
Residue number A
21
Residue number B
24
Peptide name
E3 ubiquitin-protein ligase TRIM56
Ligandability
Cysteine 21 of E3 ubiquitin-protein ligase TRIM56
Cysteine 24 of E3 ubiquitin-protein ligase TRIM56
If this tool was useful for finding a disulphide, please cite: