ReDisulphID

a tool for identifying drug-targetable redox-active disulphides

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Exosome complex exonuclease RRP44

Intramolecular
Cysteine 36 and cysteine 39
Cysteine 31 and cysteine 39
Cysteine 31 and cysteine 36
Cysteine 474 and cysteine 476 L
Cysteine 755 and cysteine 814
Cysteine 474 and cysteine 492 L
Cysteine 476 and cysteine 492 L
A redox-regulated disulphide may form within Exosome complex exonuclease RRP44 between cysteines 36 and 39.

Details

Redox score ?
82
PDB code
6h25
Structure name
human nuclear rna exosome exo-10-mpp6 complex
Structure deposition date
2018-07-13
Thiol separation (Å)
4
Half-sphere exposure sum ?
48
Minimum pKa ?
8
% buried
28
Peptide accession
Q9Y2L1
Residue number A
36
Residue number B
39
Peptide name
Exosome complex exonuclease RRP44

Ligandability

Cysteine 36 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 39 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Exosome complex exonuclease RRP44 between cysteines 31 and 39.

Details

Redox score ?
72
PDB code
6h25
Structure name
human nuclear rna exosome exo-10-mpp6 complex
Structure deposition date
2018-07-13
Thiol separation (Å)
4
Half-sphere exposure sum ?
61
Minimum pKa ?
10
% buried
51
Peptide accession
Q9Y2L1
Residue number A
31
Residue number B
39
Peptide name
Exosome complex exonuclease RRP44

Ligandability

Cysteine 31 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 39 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Exosome complex exonuclease RRP44 between cysteines 31 and 36.

Details

Redox score ?
72
PDB code
6h25
Structure name
human nuclear rna exosome exo-10-mpp6 complex
Structure deposition date
2018-07-13
Thiol separation (Å)
5
Half-sphere exposure sum ?
69
Minimum pKa ?
8
% buried
40
Peptide accession
Q9Y2L1
Residue number A
31
Residue number B
36
Peptide name
Exosome complex exonuclease RRP44

Ligandability

Cysteine 31 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 36 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Exosome complex exonuclease RRP44 between cysteines 474 and 476. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
47
PDB code
6h25
Structure name
human nuclear rna exosome exo-10-mpp6 complex
Structure deposition date
2018-07-13
Thiol separation (Å)
8
Half-sphere exposure sum ?
65
Minimum pKa ?
10
% buried
59
Peptide accession
Q9Y2L1
Residue number A
474
Residue number B
476
Peptide name
Exosome complex exonuclease RRP44

Ligandability

Cysteine 474 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 476 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Exosome complex exonuclease RRP44 between cysteines 755 and 814. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
46
PDB code
6d6r
Structure name
human nuclear exosome-mtr4 rna complex - composite map after focused reconstruction
Structure deposition date
2018-04-22
Thiol separation (Å)
8
Half-sphere exposure sum ?
72
Minimum pKa ?
9
% buried
66
Peptide accession
Q9Y2L1
Residue number A
755
Residue number B
814
Peptide name
Exosome complex exonuclease RRP44

Ligandability

Cysteine 755 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 814 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Exosome complex exonuclease RRP44 between cysteines 474 and 492. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
41
PDB code
6d6q
Structure name
human nuclear exosome-mtr4 rna complex - overall reconstruction
Structure deposition date
2018-04-22
Thiol separation (Å)
8
Half-sphere exposure sum ?
69
Minimum pKa ?
10
% buried
63
Peptide accession
Q9Y2L1
Residue number A
474
Residue number B
492
Peptide name
Exosome complex exonuclease RRP44

Ligandability

Cysteine 474 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Not ligandable in the dataset of Kuljanin et al.

Cysteine 492 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Ligandable in the dataset of Kuljanin et al.

A redox-regulated disulphide may form within Exosome complex exonuclease RRP44 between cysteines 476 and 492. However, the redox score of this cysteine pair is lower than any known redox-active intermolecular disulphide. ?

Details

Redox score ?
27
PDB code
6d6q
Structure name
human nuclear exosome-mtr4 rna complex - overall reconstruction
Structure deposition date
2018-04-22
Thiol separation (Å)
10
Half-sphere exposure sum ?
79
Minimum pKa ?
12
% buried
87
Peptide accession
Q9Y2L1
Residue number A
476
Residue number B
492
Peptide name
Exosome complex exonuclease RRP44

Ligandability

Cysteine 476 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Ligandable in the dataset of Kuljanin et al.

Cysteine 492 of Exosome complex exonuclease RRP44

Not ligandable in the dataset of Yang et al.

Not ligandable in the dataset of Yan et al.

Not ligandable in the dataset of Backus et al.

Not ligandable in the dataset of Vinogradova et al.

Not ligandable in the dataset of Cao et al.

Ligandable in the dataset of Kuljanin et al.

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